Try our re-instated info resource - "Aladdin's Cave" (Main menu)- sorry it's taken so long to fix
Just trying to think outside the box, could this be caused by the retainig clip coming off the gear selector fork?
I'm not immediately , in fine detail, familiar with 400 gearbox components. In answer to this though "What actually holds the gear shift shaft in place? Is it just the gear shifter? Does anything hold it in place on the clutch side?" The shift drum will be limited for end float to control that lateral movement. Turning it to change gear, it has to remain still while pushing & pulling the selector forks across the gearbox to select the ratios. Insufficient restraint and it will move instead of the forks, making selection poor, possibly bringing a severe clash that will break parts.Usually it'll be something of circlip, thrust washer or bolted through a bearing that's fully retained in the case, this to give that assured sideways location. A workshop/ parts schematic should show the relevant components.