Try our new info resource - "Aladdin's Cave" (Main menu)Just added a separate link to Ash's Dropbox thread (shortcut)
Even Gerben cam make a mistake Ted. Always worth checking.As for the boot, you may have to alter your riding position a bit or wear shorter boots. I've got some Marc Marquez ankle boots by Alpine Star and find them really comfortable, much more so then my Sidi boots.
I'd check the gear lever Ted as well, behind the part where it clamps. The 500 lever is very slightly longer than the 550 lever but they look identical, it's very easy to mix the 2 up. The 550 has a letter A stamped on the inside of that block, the 500 doesn't. Check post 171 on this thread http://www.sohc.co.uk/index.php/topic,19895.165.html
I have read on the US site of people having that problem with the choke Ted but never had it myself, the lever can be moved on the splines but you need to make sure the clamp bolt does not foul against anything, if you want i will try and find another gear lever so you could try and modify the shape to help.
Nice project Ted! Good luck, we look forward to updates. (Check clock mounting bracket, bent or loose) maybe just the angle but look as if they are sitting flatter than the norm.