I think not using the standard air box on the CR will make a big difference, I've got modified K&N type pod filters on mine (grafted the rubber inlet trumpets from the standard air box into the K&Ns to get a smooth airflow into the PD41A carbs), a 4 into 1 exhaust, I've gone up to 135 mains , standard primary's, I get a good plug colour and no flat spots, every set up is of course going to be different though.