Try our new info resource - "Aladdin's Cave" (Main menu)Just added a separate link to Ash's Dropbox thread (shortcut)
Any diesel residues still in the fuel system ?
If the leads are long enough try swapping the two cylinders to eliminate a HT coil lead issue.
When the rebore was done, were the valves checked and also clearances set properly upon re assembly.?
That diagram is all wrong.As you sit astride the bike Cylinder 1 is on the far outer left, then its cylinders ,2,3,4.